Feature/pylace removable rows

.github/scripts/find_compatible_wheel.py

@@ -10,23 +10,29 @@
     description="Program to find wheels in a directory compatible with the current version of Python"
 )
 
-parser.add_argument("package", help="The name of the package that you are searching for a wheel for")
+parser.add_argument(
+    "package", help="The name of the package that you are searching for a wheel for"
+)
 parser.add_argument("dir", help="the directory under which to search for the wheels")
 
-args=parser.parse_args()
+args = parser.parse_args()
 
-wheel=None
+wheel = None
 
 for tag in sys_tags():
     print(f"Looking for file matching tag {tag}", file=sys.stderr)
-    matches=glob.glob(args.package + "*" + str(tag) + "*.whl", root_dir=args.dir)
+    matches = glob.glob(f"{args.package}*{tag}*.whl", root_dir=args.dir)
     if len(matches) == 1:
-        wheel=matches[0]
+        wheel = matches[0]
         break
     elif len(matches) > 1:
-        print("Found multiple matches for the same tag " + str(tag), matches, file=sys.stderr)
+        print(
+            f"Found multiple matches for the same tag `{tag}`",
+            matches,
+            file=sys.stderr,
+        )
 
-if wheel: 
+if wheel:
     print(os.path.join(args.dir, wheel))
 else:
     sys.exit("Did not find compatible wheel")

.github/workflows/changelog.yaml

@@ -12,7 +12,7 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-      
+
       - run: |
           eval "$(/home/linuxbrew/.linuxbrew/bin/brew shellenv)"
           brew install nbbrd/tap/heylogs

.github/workflows/python-build-test.yaml

@@ -20,7 +20,7 @@ jobs:
     defaults:
       run:
         working-directory: pylace
-    
+
     steps:
       - uses: actions/checkout@v4
 
@@ -30,7 +30,7 @@ jobs:
           python-version: '3.12'
           cache: 'pip'
           cache-dependency-path: "pylace/requirements-lint.txt"
-      
+
       - name: Install Python dependencies
         run: |
           pip install --upgrade pip
@@ -102,18 +102,18 @@ jobs:
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
+          maturin-version: 1.5.1
           target: ${{ matrix.target }}
           args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12 --manifest-path pylace/Cargo.toml
           manylinux: auto
-    
+
       - name: Install dev dependencies
         run: |
           pip install --upgrade pip
           pip install -r pylace/requirements-dev.txt
 
       - name: Install pylace
         run: |
-          ls -l ./dist
           WHEEL_FILE=$(python3 .github/scripts/find_compatible_wheel.py pylace ./dist)
           echo "Installing $WHEEL_FILE"
           pip install $WHEEL_FILE
@@ -147,17 +147,17 @@ jobs:
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
+          maturin-version: 1.5.1
           target: ${{ matrix.target }}
           args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12 --manifest-path pylace/Cargo.toml
-    
+
       - name: Install dev dependencies
         run: |
           pip install --upgrade pip
           pip install -r pylace/requirements-dev.txt
 
       - name: Install pylace
         run: |
-          ls -l ./dist
           $WHEEL_FILE = (python3 .github/scripts/find_compatible_wheel.py pylace ./dist)
           echo "Installing $WHEEL_FILE"
           pip install $WHEEL_FILE
@@ -172,11 +172,15 @@ jobs:
           path: dist
 
   macos:
-    runs-on: macos-latest
     needs: ["lint-python", "lint-rust"]
     strategy:
       matrix:
-        target: [x86_64, aarch64]
+        include:
+          - os: macos-latest
+            target: aarch64
+          - os: macos-13
+            target: x86_64
+    runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
@@ -190,24 +194,22 @@ jobs:
       - name: Build wheels
         uses: PyO3/maturin-action@v1
         with:
+          maturin-version: 1.5.1
           target: ${{ matrix.target }}
           args: --release --out dist -i python3.8 -i python3.9 -i python3.10 -i python3.11 -i python3.12 --manifest-path pylace/Cargo.toml
 
       - name: Install dev dependencies
-        if: ${{ matrix.target != 'aarch64' }}
         run: |
           pip install --upgrade pip
           pip install -r pylace/requirements-dev.txt
 
       - name: Install pylace
-        if: ${{ matrix.target != 'aarch64' }}
         run: |
           WHEEL_FILE=$(python3 .github/scripts/find_compatible_wheel.py pylace ./dist)
           echo "Installing $WHEEL_FILE"
           pip install $WHEEL_FILE
 
       - name: Run Tests
-        if: ${{ matrix.target != 'aarch64' }}
         run: pytest pylace/tests
 
       - name: Upload wheels

CHANGELOG.md

@@ -20,15 +20,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Changed `SerializedType` default to `Bincode`
 - moved `Assignment` from `lace_cc` to `lace_stats`
 
-## [python-0.8.0] 2024-04-10
+## [python-0.8.0] - 2024-04-10
 
 ### Added
 
-- Added ability Pitman-Yor prior process
+- Added ability Pitman-Yor prior process.
+- Added `remove_rows` to `Engine`.
+- Added `with_index` to `CodeBook`.
 
 ### Changed
 
 - `StateAlpha` and `ViewAlpha` transitions are now `StatePriorProcessParams` and `ViewPriorProcessParams`
+- Updated Pyo3 version to 0.21
 
 ## [python-0.7.1] - 2024-02-27
 

CITATION.cff

@@ -34,5 +34,5 @@ keywords:
   - Bayesian
   - Machine Learning
 license: BUSL-1.1
-version: 0.7.0
+version: 0.8.0
 date-released: '2024-02-07'

book/lace_preprocess_mdbook_yaml/Cargo.toml

@@ -16,8 +16,8 @@ path = "src/main.rs"
 anyhow = "1.0"
 clap = "4.2"
 env_logger = "0.10"
-lace_codebook = { path = "../../lace/lace_codebook", version = "0.6.0" }
-lace_stats = { path = "../../lace/lace_stats", version = "0.3.0" }
+lace_codebook = { path = "../../lace/lace_codebook", version = "0.7.0" }
+lace_stats = { path = "../../lace/lace_stats", version = "0.4.0" }
 log = "0.4"
 mdbook = "0.4"
 pulldown-cmark = { version = "0.9", default-features = false }