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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 243

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 25

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 78 repositories
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 4 1 Updated Apr 1, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 4 2 Updated Apr 1, 2025
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 25 14 2 Updated Apr 1, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated Apr 1, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 5 0 Updated Apr 1, 2025
  • qiime2 Public

    Official repository for the QIIME 2 framework.

    qiime2/qiime2’s past year of commit activity
    Python 496 BSD-3-Clause 243 67 (5 issues need help) 7 Updated Mar 31, 2025
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 42 26 (3 issues need help) 1 Updated Mar 31, 2025
  • moving-pictures-tutorial Public

    Moving Pictures Tutorial source

    qiime2/moving-pictures-tutorial’s past year of commit activity
    Makefile 0 0 0 0 Updated Mar 31, 2025
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    qiime2/q2-fmt’s past year of commit activity
    Python 4 BSD-3-Clause 11 7 3 Updated Mar 28, 2025
  • library-plugins Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-plugins’s past year of commit activity
    0 BSD-3-Clause 5 0 0 Updated Mar 28, 2025

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