Skip to content

Commit

Permalink
MAINT: updates to be compatible with q2-stats (#104)
Browse files Browse the repository at this point in the history
* updates to stats

* silly space

* types
  • Loading branch information
cherman2 authored Oct 24, 2024
1 parent 8ae11f3 commit 9a27849
Show file tree
Hide file tree
Showing 3 changed files with 5 additions and 30 deletions.
4 changes: 2 additions & 2 deletions q2_fmt/_peds.py
Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,8 @@

from qiime2 import Metadata
from q2_fmt._engraftment import _get_to_baseline_ref
from q2_fmt._util import json_replace
from q2_stats._visualizer import _make_stats
from q2_stats.util import json_replace
from q2_stats.plots.raincloud import _make_stats


def peds(ctx, table, metadata, peds_metric, time_column, reference_column,
Expand Down
26 changes: 0 additions & 26 deletions q2_fmt/_util.py

This file was deleted.

5 changes: 3 additions & 2 deletions q2_fmt/plugin_setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,9 @@
import q2_fmt
from q2_types.feature_table import (
FeatureTable, Frequency, RelativeFrequency, PresenceAbsence)
from q2_stats._type import (Dist1D, Matched, Independent, Ordered,
Unordered, StatsTable, Pairwise, NestedOrdered)
from q2_stats.types import (Dist1D, Matched, Independent, Ordered,
Unordered, StatsTable, Pairwise,
NestedOrdered)
import q2_fmt._examples as ex

citations = Citations.load('citations.bib', package='q2_fmt')
Expand Down

0 comments on commit 9a27849

Please sign in to comment.