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New simulate and power analysis interfaces #282

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merged 18 commits into from
Jul 10, 2024
Merged

New simulate and power analysis interfaces #282

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60beffc
Deprecate old simulate and powerAnalysis methods
kenkellner Jul 3, 2024
57df915
Basic new simulation and power analysis functionality
kenkellner Jul 3, 2024
4a8e6d1
Re-enable random effects support
kenkellner Jul 5, 2024
c60df99
Handle random effects in power analysis
kenkellner Jul 5, 2024
bc7f21e
Update docs for simulate methods
kenkellner Jul 5, 2024
2c5c456
Fix power analysis docs
kenkellner Jul 5, 2024
3325392
Merge branch 'master' into new_sim_power
kenkellner Jul 7, 2024
cb876e4
New simulate vignette
kenkellner Jul 7, 2024
27afa2a
Update unmarkedPowerList stuff
kenkellner Jul 8, 2024
9ea26cf
Add back parallel functionality
kenkellner Jul 8, 2024
15849f8
Add support for the rest of the fitting function types
kenkellner Jul 8, 2024
f54a8c5
New power analysis vignette
kenkellner Jul 9, 2024
7babecc
Progress on new simulate tests
kenkellner Jul 9, 2024
b2a1f04
Merge branch 'master' into new_sim_power
kenkellner Jul 9, 2024
1b81b0c
Finish simulate tests
kenkellner Jul 9, 2024
1314e4f
Merge branch 'master' into new_sim_power
kenkellner Jul 9, 2024
d85700d
Fix file load order
kenkellner Jul 9, 2024
5dd3fb7
Add power analysis tests
kenkellner Jul 10, 2024
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7 changes: 4 additions & 3 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: unmarked
Version: 1.4.1.9004
Date: 2024-07-09
Version: 1.4.1.9005
Date: 2024-07-10
Type: Package
Title: Models for Data from Unmarked Animals
Authors@R: c(
Expand Down Expand Up @@ -57,10 +57,11 @@ Collate: 'classes.R' 'unmarkedEstimate.R' 'mapInfo.R' 'unmarkedFrame.R'
'plotEffects.R'
'mixedModelTools.R'
'power.R'
'simulate.R'
'deprecated_sim_power.R'
'predict.R'
'goccu.R'
'occuCOP.R'
'simulate.R'
'RcppExports.R'
'zzz.R'
LinkingTo:
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2 changes: 1 addition & 1 deletion NAMESPACE
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Expand Up @@ -40,7 +40,7 @@ exportClasses(unmarkedFit, unmarkedFitOccu, unmarkedFitOccuFP, unmarkedFitDS,
unmarkedFrameGPC, unmarkedEstimate, unmarkedFitList,
unmarkedModSel, unmarkedRanef, unmarkedFrameOccuMulti,
unmarkedFrameOccuMS, unmarkedFrameGDR, unmarkedCrossVal,
unmarkedPostSamples, unmarkedPower, unmarkedPowerList)
unmarkedPostSamples, unmarkedPower_old, unmarkedPowerList_old)

# Methods
exportMethods(backTransform, coef, confint, coordinates, fitted, getData,
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