deps: update hts-sys to 2.2.0 (#457) #880
Annotations
17 warnings
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Test:
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Test:
src/bcf/header.rs#L554
unused import: `super::*`
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Test:
src/bcf/record.rs#L134
field `buffer` is never read
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Test:
src/tbx/mod.rs#L94
field `hts_format` is never read
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Test:
src/bam/record.rs#L140
the type `hts_sys::bam1_t` does not permit being left uninitialized
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Test
`rust-htslib` (lib) generated 4 warnings (run `cargo fix --lib -p rust-htslib` to apply 1 suggestion)
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Test
`rust-htslib` (lib test) generated 6 warnings (4 duplicates) (run `cargo fix --lib -p rust-htslib --tests` to apply 2 suggestions)
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Test:
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Test
1 warning emitted
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Run Swatinem/[email protected]
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Run Swatinem/[email protected]
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Run Swatinem/[email protected]
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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