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template-building

Scripts and code relating to building anatomical templates, outlined in the paper Bogovic et al. "An unbiased template of the Drosophila brain and ventral nerve cord".

Associated template images and transformations can be downloaded here. We also provide fiji scripts for automatically downloading multiple templates or downloading multiple transformations at once. See here for help on running Fiji scripts.

Installation

Prerequisites

Instructions (Unix-based: Linux/Mac)

  • Check out and install this repo:
git clone https://github.com/saalfeldlab/template-building.git
cd template-building
git checkout v0.1.0
mvn clean compile install
  • To install into your Fiji: mvn -Dimagej.app.directory=<path to your Fiji>

Documentation

Notes