Copy some VCF writer tests from sgkit #2
Workflow file for this run
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name: CI | |
on: | |
pull_request: | |
push: | |
branches: | |
- main | |
jobs: | |
test: | |
name: Test | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
# Use macos-13 because pip binary packages for ARM aren't | |
# available for many dependencies | |
os: [macos-13, macos-14, ubuntu-latest] | |
python-version: ["3.9", "3.10", "3.11"] | |
exclude: | |
# Just run macos tests on one Python version | |
- os: macos-13 | |
python-version: "3.10" | |
- os: macos-13 | |
python-version: "3.11" | |
- os: macos-14 | |
python-version: "3.9" | |
- os: macos-14 | |
python-version: "3.10" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install '.[dev]' | |
- name: Run tests | |
run: | | |
pytest | |
packaging: | |
name: Packaging | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: '3.11' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install build twine validate-pyproject[all] | |
- name: Check and install package | |
run: | | |
validate-pyproject pyproject.toml | |
python -m build | |
python -m twine check --strict dist/* | |
python -m pip install dist/*.whl | |
- name: Check vcztools CLI | |
run: | | |
vcztools --help | |
python -m vcztools --help |