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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1k 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 82 36

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 66 29

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 59 17

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 46 12

  6. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 44 15

Repositories

Showing 10 of 126 repositories
  • CAS-UNIL-intro-to-unix Public

    Introduction to Linux / UNIX and the Bash shell - UNIL CAS in data stewardship

    sib-swiss/CAS-UNIL-intro-to-unix’s past year of commit activity
    0 0 0 0 Updated Apr 1, 2025
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 13 MIT 1 9 0 Updated Apr 1, 2025
  • unix-first-steps-training Public

    SIB First Steps with UNIX course

    sib-swiss/unix-first-steps-training’s past year of commit activity
    6 3 0 0 Updated Apr 1, 2025
  • sequencing-data-analysis-training Public

    SIB course that introduces analysis of NGS data

    sib-swiss/sequencing-data-analysis-training’s past year of commit activity
    Shell 16 CC-BY-4.0 12 5 1 Updated Apr 1, 2025
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 30 MIT 3 2 0 Updated Apr 1, 2025
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
    HTML 14 17 6 (1 issue needs help) 3 Updated Mar 31, 2025
  • statistics-and-machine-learning-training Public
    sib-swiss/statistics-and-machine-learning-training’s past year of commit activity
    Jupyter Notebook 27 CC-BY-4.0 11 0 1 Updated Mar 31, 2025
  • obelisk-docker Public
    sib-swiss/obelisk-docker’s past year of commit activity
    Shell 1 0 0 0 Updated Mar 31, 2025
  • single-cell-python-training Public
    sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 3 CC-BY-4.0 0 0 0 Updated Mar 30, 2025
  • spatial-transcriptomics-training Public
    sib-swiss/spatial-transcriptomics-training’s past year of commit activity
    R 2 CC-BY-4.0 1 1 0 Updated Mar 30, 2025
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