v5.1.0

5.1.0 (2023-11-10)

Features

• gene coverage report (#270) (19ee0eb)
• genomenexus link (#271) (16c4a50)

Bug Fixes

• update fastqc wrapper to v1.10.0 to include memory parsing fix (#272) (ed8b391)

v5.0.2

5.0.2 (2023-10-09)

Bug Fixes

• remove superfluous import of FTP remote provider (ae68b90)

v5.0.1

5.0.1 (2023-08-25)

Bug Fixes

• general fixes and optimizations (#263) (cc486d7)
• sample has umis (#265) (914ddfa)
• switch mem_gb to mem_mb (#262) (6bda9b5)

v5.0.0

5.0.0 (2023-08-15)

⚠ BREAKING CHANGES

• make annotations for candidate variant filtering configurable (#251)

Features

• allow umis in both paired end reads (#257) (2fdc798)
• make annotations for candidate variant filtering configurable (#251) (b51bd9d)

Bug Fixes

• allow using one sample in multiple groups (#258) (e336f7a)

v4.2.0

4.2.0 (2023-08-10)

Features

• update envs and wrappers (#255) (085df20)

v4.1.0

4.1.0 (2023-08-07)

Features

• Handle trimmed fastqs plus additional fixes (#252) (13ae724)

v4.0.2

4.0.2 (2023-06-29)

Bug Fixes

• hide binned vaf (#250) (fedd817)
• set id optional (#247) (b91e3a5)

Performance Improvements

• update to varlociraptor 8.3 (#249) (c81c440)

v4.0.1

4.0.1 (2023-06-14)

Bug Fixes

• update varlociraptor (#244) (361c9ee)

Performance Improvements

• update to latest datavzrd (#245) (d4ee98a)

v4.0.0

4.0.0 (2023-06-12)

⚠ BREAKING CHANGES

• use lowercase for all header names in report tables (#238)

Features

• add binned vaf column for sorting by allele frequency (#240) (a428b30)
• update observation plot to horizontal stacked bars with annotation variable checkbox (#242) (762d3be)
• use lowercase for all header names in report tables (#238) (f142d32)
• use MANE+clinical for selecting representative transcripts (#235) (0af4ba0)

Bug Fixes

• fix mixed up VEP and VEP-cache versions (#241) (86ccece)
• observations plots (#243) (615d9cc)

v3.24.3

3.24.3 (2023-05-09)

Bug Fixes

• use annotated calls (#234) (0821a01)