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@rootze rootze released this 15 Nov 08:58
· 24 commits to main since this release
v1.0.3
3beab8a
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What's Changed

  • ArchR2Signac() now can take a list of fragments paths, which made the function easier to use when fragments files are from entirely different directories
seurat_atac <- ArchR2Signac(
  ArchRProject = proj, # an ArchRProject
  refversion = "hg38",
  samples = samples,
  fragments_dir = fragments_dirs,
  pm = pkm,
  fragments_fromcellranger = "YES",
  annotation = annotations
)
  • When fragments_fromcellranger = "NO", please set the file extension for the fragments file, fragments_file_extension <- ".fragments.tsv.gz" or any format that you select
  • Updates in readme and function descriptions

Contributors

@rootze added a new function and updated the ArchRSignac Package

Full Changelog: https://github.com/swaruplabUCI/ArchRtoSignac/commits/v1.0.2

Contributors

rootze
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