📚 Tools and databases for analyzing HLA and VDJ genes.

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

Deep learning framework for proteomics

Precision HLA typing from next-generation sequencing data

Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.

CERTI is an Open Source HLA RTI. HLA (High-Level Architecture) is a general purpose architecture for distributed computer simulation systems. In HLA systems, the RTI (RunTime Infrastructure) manages data exchange between simulations. CERTI supports HLA 1.3 specifications (C++ and Java) and partial IEEE 1516-v2000 and IEEE 1516-v2010 (C++) . CERT…

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

HLA-II ligand predictor.

Kourami: Graph-guided assembly for HLA alleles

Fork of the Polysolver project

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

A collection of modules to process and analyze IMGT-HLA sequences.

An HLA star-calling tool for PacBio HiFi data types

The repository contains all the code for the paper amino acid encoding using deep learning application

IDE for the HLA language, written in HLA. Self compiles using HIDE

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

Code to run the scHLApers pipeline for personalized single-cell HLA quantification

HLA ARD Reduction in Python

HLA typing for Sanger Based Test

🐶 hlabud: HLA genotype analysis in R