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Removing hard limit on current downloads and documentation wording improvements #203

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Apr 26, 2024
Merged

Removing hard limit on current downloads and documentation wording improvements #203

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b3fd55e
removing hard cap on file size of current downloads. this is slower,…
wcornwell Apr 24, 2024
4fe059c
better wording in documentation
wcornwell Apr 24, 2024
1817165
other place there was a hard cap
wcornwell Apr 24, 2024
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2 changes: 0 additions & 2 deletions R/load_taxonomic_resources.R
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Original file line number Diff line number Diff line change
Expand Up @@ -337,7 +337,6 @@ dataset_access_function <-
tryCatch({
APC <- readr::read_csv(
"https://biodiversity.org.au/nsl/services/export/taxonCsv",
n_max = 110000,
col_types =
readr::cols(
.default = readr::col_character(),
Expand All @@ -351,7 +350,6 @@ dataset_access_function <-
APNI <-
readr::read_csv(
"https://biodiversity.org.au/nsl/services/export/namesCsv",
n_max = 140000,
col_types =
readr::cols(
.default = readr::col_character(),
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9 changes: 5 additions & 4 deletions R/native_anywhere_in_australia.R
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Original file line number Diff line number Diff line change
@@ -1,10 +1,11 @@
#' For a vector of taxon names in to the APC, check if the species are native anywhere in Australia
#'
#' This function checks if the given species is native anywhere in Australia according to the APC.
#' Note that this will not detect within-Australia introductions, e.g. if a species is from Western Australia and is invasive on the east coast.
#' And recent invasions are unlikely to be documented yet in APC.
#' This function checks which species from a list is thought to be native anywhere in Australia according to the APC.
#' Important caveats: this will not detect within-Australia introductions, e.g. if a species is from Western Australia and is invasive on the east coast.
#' Also, very recent invasions are unlikely to be documented yet in APC.
#' Ideally check spelling and taxonomy updates first via \link{create_taxonomic_update_lookup}.
#' For the complete matrix of species by states that also represents within-Australia invasions,
#' use \link{create_species_state_origin_matrix}. For spelling checks and taxonomy updates please see \link{create_taxonomic_update_lookup}.
#' use \link{create_species_state_origin_matrix}.
#'
#' @family diversity methods
#' @param species A character string typically representing the binomial for the species.
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2 changes: 0 additions & 2 deletions R/release.R
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,6 @@ download_taxonomic_resources_for_release<- function(version_name = NULL, path =
APC <-
readr::read_csv(
"https://biodiversity.org.au/nsl/services/export/taxonCsv",
n_max = 110000,
col_types =
readr::cols(
.default = readr::col_character(),
Expand All @@ -43,7 +42,6 @@ readr::write_csv(APC, file = paste0(path,"apc.tar.gz"))
APNI <-
readr::read_csv(
"https://biodiversity.org.au/nsl/services/export/namesCsv",
n_max = 140000,
col_types =
readr::cols(
.default = readr::col_character(),
Expand Down
9 changes: 5 additions & 4 deletions man/native_anywhere_in_australia.Rd
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