crancheck fixes

umccr · Oct 3, 2024 · b5b5b70 · b5b5b70
1 parent fec2063
commit b5b5b70
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Showing 4 changed files with 7 additions and 5 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -16,7 +16,6 @@
 ^data-raw$
 ^\.bumpversion\.toml$
 
-inst/rmd/rnasum.html
 ^CODE_OF_CONDUCT\.md$
 ^inst/rmd/rnasum.html$
 inst/rmd/html
diff --git a/R/utils_shortcuts.R b/R/utils_shortcuts.R
@@ -23,4 +23,6 @@ dummy1 <- function() {
   optparse::make_option
   preprocessCore::normalize.quantiles
   ragg::agg_png
+  purrr::map
+  stringr::str_detect
 }
diff --git a/man/pcgr_tiers_tsv_read.Rd b/man/pcgr_tiers_tsv_read.Rd
diff --git a/tests/testthat/test-roxytest-testexamples-pcgr.R b/tests/testthat/test-roxytest-testexamples-pcgr.R
@@ -2,7 +2,7 @@
 
 # File R/pcgr.R: @testexamples
 
-test_that("Function pcgr_tiers_tsv_read() @ L17", {
+test_that("Function pcgr_tiers_tsv_read() @ L18", {
 
   x <- system.file(
     "rawdata/test_data/umccrised/test_sample_WGS/small_variants",