Merge pull request #194 from umccr/bugfix/rename-study-and-participan…

…t-keys-for-deidentified-samples
umccr · Nov 22, 2023 · d1494cb · d1494cb
2 parents fa73a78 + fa18b47
commit d1494cb
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/...mbdas/get_metadata_from_portal_and_defaults_and_launch_validation_workflow/lambda_code.py b/...mbdas/get_metadata_from_portal_and_defaults_and_launch_validation_workflow/lambda_code.py
@@ -188,10 +188,10 @@ def lambda_handler(event, context):
         )
     # For deidentified - we rename the external subject id as the study subject identifier
     else:
-        sample_df["study_identifier"] = sample_df["project_name"]
+        sample_df["study_id"] = sample_df["project_name"]
         sample_df = sample_df.rename(
             columns={
-                "external_subject_id": "study_subject_identifier"
+                "external_subject_id": "participant_id"
             }
         )
 

diff --git a/...k/lambdas/get_metadata_from_portal_and_redcap_and_launch_clinical_workflow/lambda_code.py b/...k/lambdas/get_metadata_from_portal_and_redcap_and_launch_clinical_workflow/lambda_code.py
@@ -303,12 +303,12 @@ def lambda_handler(event, context):
                 "external_subject_id": "mrn"
             }
         )
-    # Step 7b - for deidentified samples, use study_identified and study_subject_identifier
+    # Step 7b - for deidentified samples, use study_identified and participant_id
     else:
-        merged_df["study_identifier"] = merged_df["project_name"]
+        merged_df["study_id"] = merged_df["project_name"]
         merged_df = merged_df.rename(
             columns={
-                "external_subject_id": "study_subject_identifier"
+                "external_subject_id": "participant_id"
             }
         )