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Update runinfo xml regex #206

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Nov 26, 2023
Merged

Update runinfo xml regex #206

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6ce1725
Old samples will use runinfo xmls from production/raw_data location
alexiswl Nov 26, 2023
ab4ecf1
Merge pull request #205 from umccr/bugfix/update-runinfo-xml-regex-fo…
alexiswl Nov 26, 2023
94b3af8
Update changelog
alexiswl Nov 26, 2023
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10 changes: 10 additions & 0 deletions Changelog.md
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Expand Up @@ -4,6 +4,16 @@ Changes in this log refer only to changes that make it to the 'main' branch. and

For changes in deployment, please see the [deployment changelog](deploy/cttso-ica-to-pieriandx-cdk/Changelog.md)

## 2023-11-27

> Author: Alexis Lucattini
> Email: [[email protected]](mailto:[email protected])
### Hotfixes
* Fix Run info xml regex, run info may also come from production/raw_data (https://github.com/umccr/cttso-ica-to-pieriandx/pull/205)
* Resolves https://github.com/umccr/cttso-ica-to-pieriandx/issues/204


## 2023-11-22

> Author: Alexis Lucattini
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2 changes: 1 addition & 1 deletion utils/globals.py
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Expand Up @@ -106,7 +106,7 @@
#########################
# RunInfo.xml
#########################
RUN_INFO_XML_REGEX = re.compile(r"gds://bssh\.\S+/Runs/([\w+|_]+)_r\.\S+/RunInfo\.xml")
RUN_INFO_XML_REGEX = re.compile(r"gds://(?:bssh\.\S+|production/raw_data)/Runs/([\w+|_]+)_r\.\S+/RunInfo\.xml")

#################
# OUTPUT GLOBALS
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