update input enum values for contam

umccr · Feb 26, 2025 · a33b0ca · a33b0ca
1 parent 44e5d5a
commit a33b0ca
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Showing 2 changed files with 12 additions and 13 deletions.
diff --git a/...gen-somatic-with-germline-pipeline/4.2.4/dragen-somatic-with-germline-pipeline__4.2.4.cwl b/...gen-somatic-with-germline-pipeline/4.2.4/dragen-somatic-with-germline-pipeline__4.2.4.cwl
@@ -935,9 +935,9 @@ inputs:
       - File
       - type: enum
         symbols:
-          - "sample_cross_contamination_resource_hg38.vcf.gz"
-          - "sample_cross_contamination_resource_hg19.vcf.gz"
-          - "sample_cross_contamination_resource_GRCh37.vcf.gz"
+          - "hg38"
+          - "hg19"
+          - "GRCh37"
 
   qc_somatic_contam_vcf:
     label: qc somatic contam vcf
@@ -950,10 +950,9 @@ inputs:
       - File
       - type: enum
         symbols:
-          - "somatic_sample_cross_contamination_resource_hg38.vcf.gz"
-          - "somatic_sample_cross_contamination_resource_hg19.vcf.gz"
-          - "somatic_sample_cross_contamination_resource_GRCh37.vcf.gz"
-
+          - "hg38"
+          - "hg19"
+          - "GRCh37"
   # Miscell
   lic_instance_id_location:
     label: license instance id location

diff --git a/...gen-somatic-with-germline-pipeline/4.3.6/dragen-somatic-with-germline-pipeline__4.3.6.cwl b/...gen-somatic-with-germline-pipeline/4.3.6/dragen-somatic-with-germline-pipeline__4.3.6.cwl
@@ -930,9 +930,9 @@ inputs:
       - File
       - type: enum
         symbols:
-          - "sample_cross_contamination_resource_hg38.vcf.gz"
-          - "sample_cross_contamination_resource_hg19.vcf.gz"
-          - "sample_cross_contamination_resource_GRCh37.vcf.gz"
+          - "hg38"
+          - "hg19"
+          - "GRCh37"
 
   qc_somatic_contam_vcf:
     label: qc somatic contam vcf
@@ -944,9 +944,9 @@ inputs:
       - File
       - type: enum
         symbols:
-          - "somatic_sample_cross_contamination_resource_hg38.vcf.gz"
-          - "somatic_sample_cross_contamination_resource_hg19.vcf.gz"
-          - "somatic_sample_cross_contamination_resource_GRCh37.vcf.gz"
+          - "hg38"
+          - "hg19"
+          - "GRCh37"
     
   # Miscell
   lic_instance_id_location: