Merge branch 'main' into bclconvert-interop-qc/1.3.1--1.21__202404100…

…40204--release-artifacts
umccr · May 6, 2024 · a840260 · a840260
2 parents fa6049a + 0f943b3
commit a840260
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diff --git a/.github/catalogue/docs/tools/rnasum/0.6.5/rnasum__0.6.5.md b/.github/catalogue/docs/tools/rnasum/0.6.5/rnasum__0.6.5.md
diff --git a/config/project.yaml b/config/project.yaml
@@ -476,6 +476,11 @@ projects:
             ica_workflow_version_name: 0.5.0
             modification_time: 2024-04-05T00:48:41UTC
             run_instances: []
+          - name: 0.6.5
+            path: 0.6.5/rnasum__0.6.5.cwl
+            ica_workflow_version_name: 0.6.5
+            modification_time: 2024-05-03T07:02:00UTC
+            run_instances: []
       - name: samtools-stats
         path: samtools-stats
         ica_workflow_name: samtools-stats_dev-wf
@@ -1294,6 +1299,11 @@ projects:
             ica_workflow_version_name: 0.5.0--304c3ac
             modification_time: 2024-04-07T23:32:05UTC
             run_instances: []
+          - name: 0.6.5
+            path: 0.6.5/rnasum__0.6.5.cwl
+            ica_workflow_version_name: 0.6.5--6f2b117
+            modification_time: 2024-05-03T14:23:06UTC
+            run_instances: []
       - name: umccrise
         path: umccrise
         ica_workflow_name: umccrise_prod-wf

diff --git a/config/tool.yaml b/config/tool.yaml
@@ -454,6 +454,9 @@ tools:
       - name: 0.5.0
         path: 0.5.0/rnasum__0.5.0.cwl
         md5sum: 81ecc826d2909bc215249864b2ff3422
+      - name: 0.6.5
+        path: 0.6.5/rnasum__0.6.5.cwl
+        md5sum: 0fba25cb234b69595a6d37f015fbc6df
     categories: []
   - name: samtools-stats
     path: samtools-stats

diff --git a/cwl-ica-catalogue.md b/cwl-ica-catalogue.md
@@ -575,6 +575,7 @@ UMCCR CWL-ICA Catalogue
 - [0.4.8](.github/catalogue/docs/tools/rnasum/0.4.8/rnasum__0.4.8.md)  
 - [0.4.9](.github/catalogue/docs/tools/rnasum/0.4.9/rnasum__0.4.9.md)  
 - [0.5.0](.github/catalogue/docs/tools/rnasum/0.5.0/rnasum__0.5.0.md)  
+- [0.6.5](.github/catalogue/docs/tools/rnasum/0.6.5/rnasum__0.6.5.md)  
 
 
 ### samtools-stats

diff --git a/expressions/get-bam-file-from-directory/1.0.1-rabix/typescript-expressions/yarn.lock b/expressions/get-bam-file-from-directory/1.0.1-rabix/typescript-expressions/yarn.lock
@@ -2734,6 +2734,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"minipass@npm:^5.0.0":
+  version: 5.0.0
+  resolution: "minipass@npm:5.0.0"
+  checksum: 425dab288738853fded43da3314a0b5c035844d6f3097a8e3b5b29b328da8f3c1af6fc70618b32c29ff906284cf6406b6841376f21caaadd0793c1d5a6a620ea
+  languageName: node
+  linkType: hard
+
 "minizlib@npm:^2.1.1, minizlib@npm:^2.1.2":
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@@ -3379,16 +3386,16 @@ __metadata:
   linkType: hard
 
 "tar@npm:^6.1.11, tar@npm:^6.1.2":
-  version: 6.1.12
-  resolution: "tar@npm:6.1.12"
+  version: 6.2.1
+  resolution: "tar@npm:6.2.1"
   dependencies:
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     fs-minipass: ^2.0.0
-    minipass: ^3.0.0
+    minipass: ^5.0.0
     minizlib: ^2.1.1
     mkdirp: ^1.0.3
     yallist: ^4.0.0
-  checksum: 49d72e4420944e7ede2782d6b0826a6ede6cdab23c7de63470917e7a78166bc4d5b1a96279d3d79a85f1ba5a17cd37c0acbb3cbff19a07447691445b8b051c55
+  checksum: f1322768c9741a25356c11373bce918483f40fa9a25c69c59410c8a1247632487edef5fe76c5f12ac51a6356d2f1829e96d2bc34098668a2fc34d76050ac2b6c
   languageName: node
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diff --git a/expressions/get-bam-file-from-directory/1.0.1/typescript-expressions/yarn.lock b/expressions/get-bam-file-from-directory/1.0.1/typescript-expressions/yarn.lock
@@ -2690,6 +2690,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"minipass@npm:^5.0.0":
+  version: 5.0.0
+  resolution: "minipass@npm:5.0.0"
+  checksum: 425dab288738853fded43da3314a0b5c035844d6f3097a8e3b5b29b328da8f3c1af6fc70618b32c29ff906284cf6406b6841376f21caaadd0793c1d5a6a620ea
+  languageName: node
+  linkType: hard
+
 "minizlib@npm:^2.1.1, minizlib@npm:^2.1.2":
   version: 2.1.2
   resolution: "minizlib@npm:2.1.2"
@@ -3335,16 +3342,16 @@ __metadata:
   linkType: hard
 
 "tar@npm:^6.1.11, tar@npm:^6.1.2":
-  version: 6.1.11
-  resolution: "tar@npm:6.1.11"
+  version: 6.2.1
+  resolution: "tar@npm:6.2.1"
   dependencies:
     chownr: ^2.0.0
     fs-minipass: ^2.0.0
-    minipass: ^3.0.0
+    minipass: ^5.0.0
     minizlib: ^2.1.1
     mkdirp: ^1.0.3
     yallist: ^4.0.0
-  checksum: a04c07bb9e2d8f46776517d4618f2406fb977a74d914ad98b264fc3db0fe8224da5bec11e5f8902c5b9bcb8ace22d95fbe3c7b36b8593b7dfc8391a25898f32f
+  checksum: f1322768c9741a25356c11373bce918483f40fa9a25c69c59410c8a1247632487edef5fe76c5f12ac51a6356d2f1829e96d2bc34098668a2fc34d76050ac2b6c
   languageName: node
   linkType: hard