Update rnasum input parameters

[skanwal]

Updating inputs to bring it at par with the current state of https://github.com/umccr/RNAsum/tree/rnasum-rpackage.

I'll create a new tag that would refer to docker image once we have completed the tests in dev.

[pdiakumis]

Following should be removed:

• clinical_info
• clinical_id
• hide_code_btn
• grch_version

Following should be added:

• dragen_mapping_metrics

Following are in the arguments but not the inputs (not sure if adding them in the inputs makes sense but just saying):

• batch_rm
• filter
• log

[skanwal]

@pdiakumis - updated in e9d5eec (#480). Also moved arguments to params and assigned defaults values too.

[skanwal]

Tested on ICA with wfr.08d375cb7c24428185142ba8a6b1cb38

[pdiakumis]

Thank you, LGTM

[pdiakumis]

Thanks for changing this :-)

[pdiakumis]

@skanwal @alexiswl the Actions are erroring out with:

Error: couldn't find remote ref update-rnasum-params

I take it the PR shouldn't have been merged straight after approval, correct?

[skanwal]

Ah yes, that's my bad. We need to wait for GH actions to complete before merging in the PRs in this repo.
@alexiswl - should I reopen the PR?

[alexiswl]

@alexiswl - should I reopen the PR?

Can't reopen a PR but I've restored the branch, reran GH actions, have added 0.5.0 version to production_workflows project with cwl-ica add-tool-to-project --project production_workflows --tool-path tools/rnasum/0.5.0/rnasum__0.5.0.cwl and have pushed that in #481