add aws-vault profile switcher #119
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name: conda-docker-docs | |
on: | |
push: | |
branches: | |
- main | |
env: | |
atoken: ${{ secrets.ANACONDA_UPLOAD_TOKEN }} | |
recipe_path: conda/recipe | |
env_yaml_path: conda/env/yaml | |
env_lock_path: conda/env/lock | |
VERSION: '0.11.0' # versioned by bump2version | |
GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }} | |
jobs: | |
condarise-dockerise-document: | |
# When merging to main and the commit message starts with 'Bump version:' | |
if: "startsWith(github.event.head_commit.message, 'Bump version:')" | |
name: Conda Docker Docs | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Code checkout | |
uses: actions/checkout@v3 | |
- name: Micromamba setup | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: '1.4.9-0' | |
environment-file: ${{ env.env_yaml_path }}/condabuild.yaml | |
- name: π Conda pkg build and upload | |
run: | | |
dvc pull | |
ls -l inst/extdata/* | |
conda mambabuild --R 4.2 ${recipe_path} --token ${atoken} | |
- name: π Conda lock | |
run: | | |
conda-lock --file ${env_yaml_path}/dracarys.yaml --platform linux-64 | |
mv conda-lock.yml ${env_lock_path}/conda-lock.yml | |
- name: πΎ Commit lockfile | |
run: | | |
# TODO: the version bumping guarantees there will be changes, | |
# but during testing this can be problematic - need to | |
# commit only if changes exist. | |
git status | |
git config --local user.email "[email protected]" | |
git config --local user.name "GitHub Actions" | |
MSG="[bot] Updating conda-lock file (v${VERSION})" | |
git add . | |
git commit -m "${MSG}" | |
git push | |
- name: π Website publish | |
run: | | |
micromamba env create -n pkgdownenv -f ${env_yaml_path}/pkgdown.yaml | |
micromamba activate pkgdownenv | |
dracarys.R --version | |
Rscript -e "pkgdown::deploy_to_branch(pkg = '.', commit_message = paste(pkgdown:::construct_commit_message('.'), '- see https://umccr.github.io/dracarys/'), branch = 'gh-pages', new_process = FALSE)" | |
- name: π₯ Pull lock commit | |
id: pull_lock_commit | |
run: | | |
git pull --no-rebase | |
git --no-pager log --decorate=short --pretty=oneline -n3 | |
LATEST_COMMIT_HASH="$(git --no-pager log -1 --format='%H')" | |
echo "latest_commit_hash=${LATEST_COMMIT_HASH}" >> $GITHUB_OUTPUT | |
- name: π Create tag | |
uses: actions/github-script@v6 | |
env: | |
LATEST_COMMIT_HASH: ${{ steps.pull_lock_commit.outputs.latest_commit_hash }} | |
with: | |
script: | | |
const the_tag_name = 'refs/tags/v' + process.env.VERSION | |
const the_sha = process.env.LATEST_COMMIT_HASH | |
github.rest.git.createRef({ | |
owner: context.repo.owner, | |
repo: context.repo.repo, | |
ref: the_tag_name, | |
sha: the_sha | |
}) | |
# work with tag from above | |
- name: Code checkout | |
uses: actions/checkout@v3 | |
with: | |
ref: v${{ env.VERSION }} | |
- name: π° QEMU setup | |
uses: docker/setup-qemu-action@v2 | |
- name: π― Buildx setup | |
uses: docker/setup-buildx-action@v2 | |
with: | |
install: true | |
config-inline: | | |
[worker.oci] | |
max-parallelism = 2 | |
- name: π GitHub CR login | |
uses: docker/login-action@v2 | |
with: | |
registry: ghcr.io | |
username: ${{ github.actor }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: π³ Docker img build and push | |
uses: docker/build-push-action@v4 | |
with: | |
tags: ghcr.io/${{ github.repository }}:${{ env.VERSION }} | |
context: . # yes, dot | |
push: true | |
platforms: linux/amd64 |