Merge pull request #124 from umccr/bclconvert

Support BCL Convert 4.2.7
umccr · Sep 3, 2024 · 24f7da7 · 24f7da7
2 parents 10ec25d + 6381b93
commit 24f7da7
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -2,7 +2,7 @@
 # R specific hooks: https://github.com/lorenzwalthert/precommit
 repos:
 -   repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.4.2
+    rev: v0.4.3
     hooks:
     -   id: style-files
         args: [--style_pkg=styler, --style_fun=tidyverse_style]

diff --git a/NAMESPACE b/NAMESPACE
@@ -3,6 +3,7 @@
 S3method(read,File)
 export(BcftoolsStatsFile)
 export(BclconvertReports)
+export(BclconvertReports375)
 export(FastqcMetricsFile)
 export(File)
 export(FragmentLengthHistFile)
@@ -33,7 +34,6 @@ export(UmQcSumFile)
 export(UmSigsSnvFile)
 export(VCMetricsFile)
 export(Wf)
-export(Wf_bcl_convert)
 export(Wf_tso_ctdna_tumor_only)
 export(WgsContigMeanCovFile)
 export(WgsCoverageMetricsFile)