Log indexing #287

ekg · 2024-10-24T14:06:37Z

Improving the logging of indexing and mapping merging and filtering.

…o avoid bottlenecks

…nc.hpp

… and filterByGroup function calls

ekg added 23 commits October 23, 2024 11:54

feat: Implement progress meter in Sketch::build method

bf8e80f

fix: move file processing logging before progress meter initialization

6a0f94c

feat: Add per-base progress tracking to addMinmers function

1a0e5ef

feat: Implement per-base tracking of progress, updating every 10kbp t…

ade966a

…o avoid bottlenecks

fix: remove progress parameter from addMinmers function call

03e8c05

remove stale parallel code

182c0f8

feat: Add progress meter to addMinmers function

d62db30

feat: Add progress meter parameter to addMinmers function in commonFu…

a368d00

…nc.hpp

fix: Pass progress pointer directly to addMinmers()

2cd76d4

fix: Pass nullptr as progress parameter in buildHelper()

eff64fa

feat: Add progress meter to buildHelper()

1c44949

fix: Update progress_meter parameter in commonFunc.hpp

35ab3c6

feat: Use bitwise AND instead of modulo for progress reporting

540ec59

fix: Remove unused progress meter from winSketch.hpp

a23953e

feat: Add progress meter parameter to buildHelper

1f12fd7

feat: Add progress meter logging with configurable interval

a96537b

refactor: Optimize progress meter update frequency and handling

ada5a4a

remove the processedbases

46bfec3

fix: Improve progress meter handling in MapQuery

2e96df0

fix: Add progress parameter to filterMappings, filterMaximallyMerged,…

eea8322

… and filterByGroup function calls

improve logging for merging and filtering

d5f8c56

cleanup and simplify logging messages

d8e1d49

shorten alignment logging

2bda62c

ekg merged commit 63fd2ac into main Oct 24, 2024
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