Code

Log indexing#287

Code

Merged

ekg merged 23 commits intomainwaveygang/wfmash:mainfrom log-indexingwaveygang/wfmash:log-indexingCopy head branch name to clipboardOct 24, 2024

+147-177

Commits

Commits on Oct 23, 2024

• feat: Implement progress meter in Sketch::build method

  ekg

  committed
  bf8e80f

• fix: move file processing logging before progress meter initialization

  ekg

  committed
  6a0f94c

• feat: Add per-base progress tracking to addMinmers function

  ekg

  committed
  1a0e5ef

• feat: Implement per-base tracking of progress, updating every 10kbp to avoid bottlenecks

  ekg

  committed
  ade966a

• fix: remove progress parameter from addMinmers function call

  ekg

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  03e8c05

• remove stale parallel code

  ekg

  committed
  182c0f8

• feat: Add progress meter to addMinmers function

  ekg

  committed
  d62db30

• feat: Add progress meter parameter to addMinmers function in commonFunc.hpp

  ekg

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  a368d00

• fix: Pass progress pointer directly to addMinmers()

  ekg

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  2cd76d4

• fix: Pass nullptr as progress parameter in buildHelper()

  ekg

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  eff64fa

• feat: Add progress meter to buildHelper()

  ekg

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  1c44949

• fix: Update progress_meter parameter in commonFunc.hpp

  ekg

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  35ab3c6

• feat: Use bitwise AND instead of modulo for progress reporting

  ekg

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  540ec59

• fix: Remove unused progress meter from winSketch.hpp

  ekg

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  a23953e

• feat: Add progress meter parameter to buildHelper

  ekg

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  1f12fd7

• feat: Add progress meter logging with configurable interval

  ekg

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  a96537b

• refactor: Optimize progress meter update frequency and handling

  ekg

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  ada5a4a

• remove the processedbases

  ekg

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  46bfec3

• fix: Improve progress meter handling in MapQuery

  ekg

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  2e96df0

• fix: Add progress parameter to filterMappings, filterMaximallyMerged, and filterByGroup function calls

  ekg

  committed
  eea8322

Commits on Oct 24, 2024

• improve logging for merging and filtering

  ekg

  committed
  d5f8c56

• cleanup and simplify logging messages

  ekg

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  d8e1d49

• shorten alignment logging

  ekg

  committed
  2bda62c