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switched to disposable-irods 1.3 (iRODS packages from Sanger S3,
replaced RENCI FTP site)
added single-server option
added support for data files to change during the tar process
and to detect and archive those changes
individually check the checksum of files local to the gridionxi
where they are loaded and compare with the iRODS checksum
updated the samtools and htslib versions to 1.7
added tar file auditor
use manifest checksums to confirm file contents
support loading PacBio RSII files created using out of date reagents
allow a user-supplied checksum to be used in TarPublisher and TarStream
(so GridIONRunPublisher can allow the checksum of uncompressed data to be used)
publish fastq files during the catchup phase
allow auditing of older GridION tar files which used a relative path for tarred files
archiving changes for illumina sequencing genotype files
fix for the regex used when choosing to ignore files