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Remove the code that directly uses `dpkg` from `update.sh` #3095

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag.

gmp 6.3.0 is already installed and up-to-date. To reinstall 6.3.0, run: brew reinstall gmp

gcc 14.2.0 is already installed and up-to-date. To reinstall 14.2.0, run: brew reinstall gcc

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