Added fastq file collision avoidance when using ONT barcodes #96

	name: Anglerfish
	on: [push, pull_request]

	jobs:
	run_anglerfish:
	name: Anglerfish py-${{ matrix.python-version }}
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.10.2]

	steps:
	# Checkout code and install miniconda + environment
	- uses: actions/checkout@v2
	- uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: anglerfish
	environment-file: environment.yml
	python-version: ${{ matrix.python-version }}
	auto-update-conda: true
	auto-activate-base: false

	# Install Anglerfish
	- shell: bash -l {0}
	name: Install Anglerfish
	run: \|
	conda activate anglerfish
	python -m pip install .

	# Run anglerfish --help
	- shell: bash -l {0}
	name: Test anglerfish
	run: \|
	conda activate anglerfish
	anglerfish --help

	# Run anglerfish using test data
	- shell: bash -l {0}
	name: Run anglerfish with test data
	run: \|
	conda activate anglerfish
	anglerfish -s test/samples.csv

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