Changed name from index to index_region in some methods

NationalGenomicsInfrastructure · Feb 13, 2024 · e273ca6 · e273ca6
1 parent 92852df
commit e273ca6
Showing 1 changed file with 8 additions and 3 deletions.
diff --git a/anglerfish/explore/explore.py b/anglerfish/explore/explore.py
@@ -104,9 +104,11 @@ def run_explore(
 
                 # Alignment thresholds
                 before_thres = round(
-                    adaptor_end.len_before_index() * good_hit_threshold
+                    adaptor_end.len_before_index_region() * good_hit_threshold
+                )
+                after_thres = round(
+                    adaptor_end.len_after_index_region() * good_hit_threshold
                 )
-                after_thres = round(adaptor_end.len_after_index() * good_hit_threshold)
                 insert_thres_low = insert_thres_low
                 insert_thres_high = insert_thres_high
 
@@ -133,7 +135,10 @@ def run_explore(
                 ] = match_col_df
 
                 thres = round(
-                    (adaptor_end.len_before_index() + adaptor_end.len_after_index())
+                    (
+                        adaptor_end.len_before_index_region()
+                        + adaptor_end.len_after_index_region()
+                    )
                     * good_hit_threshold
                 )
                 df_good_hits = df_good_hits[df_good_hits["match_1_len"] >= thres]