APAlyzer version 1.9.4

Changes in version 1.9.4 (2022-02-28)

• Fixed typos in vignettes

APAlyzer version 1.9.3

Changes in version 1.9.3 (2022-02-27)

• Fixed the issues caused by the latest Ensembl GRCm39 GTF.
• Fixed typos in vignettes

APAlyzer version 1.9.2

Changes in version 1.9.2 (2022-01-02)

• Added supporting of multi-condition design in APAdiff.

APAlyzer version 1.9.1

Changes in version 1.9.1 (2021-11-28)

• Added MultiTest parameter for APAdiff.
• Improved the performance and fixed issues in PAS2GEF.
• Update documents and authorships.

APAlyzer version 1.7.3

Changes in version 1.7.3 (2021-08-01)

• Fixed the typo in vignettes.

APAlyzer version 1.7.2

Changes in version 1.7.2 (2021-07-31)

• Fixed the issues of using 3'most bam file (generate using ThreeMostPairBam) in PASEXP_IPA.

APAlyzer version 1.7.1

Changes in version 1.7.1 (2021-07-09)

• Fixed the missing SS column issues in PAS2GEF.

APAlyzer version 1.5.5

Changes in version 1.5.5 (2021-01-31)

• Added ThreeMostPairBam to support paired-end bam.

APAlyzer version 1.5.4

Changes in version 1.5.3 (2021-01-05)

• Updated the link of PolyA_DB.
  Changes in version 1.5.4 (2021-01-10)
• Fixed the bug in PASEXP_3UTR.

APAlyzer version 1.5.2

Changes in version 1.3.3 (2020-07-20)

• Fixed hg38_REF.RData.

Changes in version 1.5.2 (2020-12-07)

• Updated Imports and authors.