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TGAC Tree 35 Assemblies
RichardBuggs edited this page May 20, 2013
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##Assembly Stats
n n:200 n:N50 min N80 N50 N20 max sum
409503 387267 62063 200 2801 5911 11876 123139 1.282e9 Fraxinus_excelsior_Nornex_s1v1-contigs.fa
249580 249580 48860 392 3526 7138 15616 315237 1.285e9 Fraxinus_excelsior_Nornex_s1v1-scaffolds.fa
##CEGMA analysis on first TGAC assembly
Statistics of the completeness of the genome based on BLASTS of 248 Core Eukaryote Genes (CEGs)
179 complete hits (72.18% of 248 CEGS), of which 73.7% have more than one ortholog (mean = 2.8 orthologs/CEG)
231 partial hits (93.15% of 248 CEGS) of which 92.6% have more than one ortholog (mean = 3.9 orthologs/CEG)
These results are based on the set of genes selected by Genis Parra