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DO NOT MERGE: Bug fix: Synonym Sync: Entries without exact mappings - mini build #696

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joeflack4
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@joeflack4 joeflack4 commented Nov 20, 2024

Mini-build for:

Compares just the synonym sync outputs, before and after the code changes.

Full build also exists:

@joeflack4 joeflack4 marked this pull request as draft November 20, 2024 03:02
@joeflack4 joeflack4 force-pushed the bugfix-syn-sync-no-exact-mappings-1-base-outputs branch from aab2d9e to 72f1862 Compare November 20, 2024 03:04
@joeflack4 joeflack4 force-pushed the bugfix-syn-sync-no-exact-mappings-3-new-outputs branch 2 times, most recently from 1087883 to ca0a63f Compare November 20, 2024 03:08
@joeflack4 joeflack4 changed the title Bugfix syn sync no exact mappings - outputs diff check DO NOT MERGE: Bug fix: Synonym Sync: Entries without exact mappings - mini build Nov 20, 2024
@joeflack4 joeflack4 self-assigned this Nov 20, 2024
@joeflack4 joeflack4 added the build Mostly for build PRs: when changes only to data files post `build-mondo-ingest`; no code changes label Nov 20, 2024
@@ -2316,7 +2283,6 @@ MONDO:0002508 gingivitis oio:hasExactSynonym gingivitis DOID:3087 gingivitis
MONDO:0002512 papillary adenocarcinoma oio:hasExactSynonym papillary adenocarcinoma DOID:3112 papillary adenocarcinoma papillary adenocarcinoma DOID:3112
MONDO:0002513 kidney benign neoplasm oio:hasExactSynonym kidney benign neoplasm DOID:3116 kidney benign neoplasm kidney benign neoplasm DOID:3116
MONDO:0002513 kidney benign neoplasm oio:hasExactSynonym renal and ureteral tumor DOID:3116 kidney benign neoplasm renal and ureteral tumor DOID:3116
MONDO:0002514 hepatobiliary neoplasm oio:hasExactSynonym hepatobiliary tumors DOID:3117 hepatobiliary benign neoplasm hepatobiliary tumors DOID:3117
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Case 1 of 2 removed

As shown in the QC error in #687, this pair (MONDO:0002514, DOID:3117) had no exact mapping. Now it is removed.

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Case 2 of 2 removed

As shown in the QC error in #687, this pair (MONDO: 0012817 , NCIT: C7542 ) had no exact mapping. Now it is removed.

The diff is too large to view, but you can examine the raw file and search and see that this entry no longer appears.

@joeflack4 joeflack4 force-pushed the bugfix-syn-sync-no-exact-mappings-1-base-outputs branch from 72f1862 to 0774062 Compare November 20, 2024 22:30
- Add: Outputs to compare to before the code in order to check the diffs for correctness.
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@joeflack4 joeflack4 deleted the bugfix-syn-sync-no-exact-mappings-3-new-outputs branch November 22, 2024 21:43
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