Add samples file option to view CLI #76
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tomwhite
approved these changes
Sep 5, 2024
|
Thanks @Will-Tyler!
I'll merge this now, but would you like to open another issue to track this? |
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Overview
This pull request adds the
-S/--samples-fileoption to thevcztools viewCLI.This pull request addresses #67, but does not implement the empty-selection semantics.
Testing
I added some validation tests to compare the output from vcztools and bcftools. The tests use the
--no-updateoption because vcztools does not recompute the INFO fields when the user specifies a sample selection (see #45).