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45 Open 296 Closed
45 Open 296 Closed
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Issues list

readAllelicCountsFile() can be very slow (with suggested fix) bug
#378 opened Dec 11, 2024 by luyh-xp
@lima1
1
Interpreting results
#377 opened Oct 11, 2024 by MaryGoAround
An unknown error happening
#376 opened Oct 2, 2024 by MaryGoAround
No off-target
#375 opened Sep 6, 2024 by El84Ja
3
I need advice when there is no normal
#373 opened Aug 22, 2024 by MaryGoAround
3
A high duplication rate for WGS
#372 opened Aug 7, 2024 by MaryGoAround
PureCN unintentionally filters out reads with supplementary alignments
#371 opened Aug 6, 2024 by tinyheero
3
Question regrading the results
#368 opened May 15, 2024 by maxanes
allelic copy number for segments
#364 opened Apr 13, 2024 by jennyp76
WARN [2024-03-12 11:57:13] Could not find valid purity and ploidy solution. Error in results[[1]] : subscript out of bounds
#358 opened Mar 12, 2024 by gagank4911
Could not find valid purity and ploidy solution
#355 opened Mar 7, 2024 by gagank4911
HRD score from PureCN outputs question
#352 opened Feb 29, 2024 by ShvartsmanIrina
2
Annotation using different database enhancement
#350 opened Feb 8, 2024 by jennyp76
1
GATK segmentation might fail when all variants on a chromosome are filtered out. bug gatk4 All things related to GATK4/Mutect2
#343 opened Jan 16, 2024 by lima1
Support for non-diploid allosome alterations
#342 opened Jan 13, 2024 by lima1
Running PureCN with only one normal samples bug
#341 opened Jan 5, 2024 by sleyn
1
Error with overlapping gaps when running PureCN
#339 opened Dec 19, 2023 by akaviaLab
6
In case this may be of help
#338 opened Dec 15, 2023 by GuidoLeoni
Mutect2 drops MBQ to 20 in overlapped reads gatk4 All things related to GATK4/Mutect2
#320 opened Sep 6, 2023 by sleyn
4
PureCN segmentation and VCF do not overlap
#316 opened Aug 22, 2023 by pavamateo
1
Add heterozygous SNP test for homozygous deletions enhancement
#273 opened Apr 6, 2023 by lima1
Remove copynumber dependency enhancement
#271 opened Mar 24, 2023 by lima1
CRAM compatibility
#244 opened Jun 27, 2022 by Jwong684
1
Improve sensitivity of low purity amplification calling pipeline enhancement
#239 opened May 29, 2022 by lima1
2 tasks
Flag difficult genes in callAmplifications enhancement
#179 opened May 16, 2021 by lima1
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