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ngs_STATS

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Stephen Fisher edited this page Mar 11, 2014 · 5 revisions

Module: STATS

This module will print out the stats from BLAST, TRIM and either STAR or RUM. The stats will be tab delimited so they can be copy-pasted into an Excel table.

Usage:
	ngs.sh stats [-v] modules sampleID

Input:
	module specific
Output:
	printing to console
Options:
	-v - verbose printing of alignment stats (default: off).
	modules - comma separated, ordered list of modules to include for stats (must not include spaces).

Prints stats for user-specified list of modules. The stats will be tab delimited so they can be copy-pasted into an Excel table. This will not write to the analysis.log file.

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