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Pull requests: theiagen/public_health_bioinformatics

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Pull requests list

[Taxon_Table] resync taxon_tables inputs
#762 by xonq was merged Feb 20, 2025 Loading…
10 of 15 tasks
[Documentation] Update actions/cache version
#761 by sage-wright was merged Feb 18, 2025 Loading…
[Documentation] improve new workflow template
#760 by sage-wright was merged Feb 18, 2025 Loading…
3 of 8 tasks
[kSNP4] Add new task/workflow for phylogenetic/SNP analysis
#759 by MrTheronJ was merged Feb 20, 2025 Loading…
8 of 11 tasks
Updates Flu Antiviral Resistance Detection Documentation
#758 by frankambrosio3 was merged Feb 14, 2025 Loading…
3 of 8 tasks
[TheiaProk] improve export taxon table functionality
#757 by sage-wright was merged Feb 18, 2025 Loading…
9 of 11 tasks
[Read_Screen] BUG fix $ to ~ reference for workflow series
#754 by xonq was merged Feb 7, 2025 Loading…
5 of 11 tasks
[NCBI Datasets] Add ability to download from ncbi viral datasets
#748 by Michal-Babins was merged Feb 5, 2025 Loading…
5 of 11 tasks
[Augur] Fix issue with empty clades.tsv file in augur_clades task
#742 by MrTheronJ was merged Feb 6, 2025 Loading…
11 tasks done
[Bakta] update to latest version full and light db
#740 by fraser-combe was merged Feb 11, 2025 Loading…
5 of 11 tasks
[Tiptoft] Deprecate Tiptoft
#739 by MrTheronJ was merged Feb 5, 2025 Loading…
4 of 11 tasks
[RASUSA] update from 0.7.0 -> 2.1.0
#731 by xonq was merged Jan 29, 2025 Loading…
14 tasks done
[TheiaEuk_Illumina_PE] Update to newest gambit fungal v1.0.0
#727 by Michal-Babins was merged Feb 13, 2025 Loading…
5 of 11 tasks
[srst2_vibrio, merlin_magic] Removed instances of srst2_ from inputs
#726 by awh082834 was merged Jan 16, 2025 Loading…
11 tasks done
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