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gbanco4 edited this page Dec 19, 2024 · 21 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

[[TOC]]

Overview

Mutations in this gene were first described in DLBCL and FL in 2021 by Hübschmann et al.[@hubschmannMutationalMechanismsShaping2021]

Relevance tier by entity

Entity Tier Description
DLBCL 2 aSHM target; Although recurrent, the relevance of mutations in DLBCL is tenuous
FL 2 aSHM target; Although recurrent, the relevance of mutations in FL is tenuous [@hubschmannMutationalMechanismsShaping2021]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 3.06
DLBCL Schmitz cohort 3.40
DLBCL Reddy cohort 2.20
DLBCL Chapuy cohort 2.56
FL GAMBL genomes 5.77

Mutation pattern and selective pressure estimates

include:dnds_LAPTM5.md

aSHM regions

chr_name hg19_start hg19_end region regulatory_comment
chr1 31229012 31232011 TSS NA

include:browser_LAPTM5.md

Expression

All Mutations

SP194065 SP116642 SP194216 SP193040 SP193656 SP116709

include:mermaid_LAPTM5.md

References

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