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MZL_genes

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rdmorin edited this page Jun 24, 2024 · 11 revisions

title: 'MZL genes' bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

Origins of MZL genes

Tier 1 MZL genes

42 total

Gene Tier First MZL evidence Other entities
ACTB 1 [@lohrDiscoveryPrioritizationSomatic2012a; @wienandGenomicAnalysesFlowsorted2019b]
ARID1A 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@wienandGenomicAnalysesFlowsorted2019b; @loveGeneticLandscapeMutations2012; @krysiakRecurrentSomaticMutations2017b; @zhangGeneticHeterogeneityDiffuse2013]
ATM 1 Braggio et al[@braggioGenomicAnalysisMarginal2012] [@beaLandscapeSomaticMutations2013; @reddyGeneticFunctionalDrivers2017]
BCL10 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@morinFrequentMutationHistonemodifying2011; @russler-germainMutationsAssociatedProgression2023b]
BCL7A 1 [@krysiakRecurrentSomaticMutations2017b; @grandeGenomewideDiscoverySomatic2019; @reichelFlowSortingExome2015a; @arthurGenomewideDiscoverySomatic2018]
BIRC3 1 Rossi et al[@rossiAlterationBIRC3Multiple2011a] [@arthurGenomewideDiscoverySomatic2018; @beaLandscapeSomaticMutations2013; @dunsCharacterizationDLBCLPMBL2021b]
BRAF 1 [@loveGeneticLandscapeMutations2012; @tiacciBRAFMutationsHairycell2011a]
BTG1 1 [@burkhardtClinicalRelevanceMolecular2022b; @morinFrequentMutationHistonemodifying2011; @sarkozyMutationalLandscapeGray2021a]
CARD11 1 Yan et al[@yanBCRTLRSignaling2012a] [@paneaWholeGenomeLandscape2019; @morinFrequentMutationHistonemodifying2011; @lenzOncogenicCARD11Mutations2008; @wuGeneticHeterogeneityPrimary2016]
CCND3 1 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@deschGenotypingCirculatingTumor2020; @richterRecurrentMutationID32012a; @morinFrequentMutationHistonemodifying2011]
CXCR4 1 [@paneaWholeGenomeLandscape2019; @khodabakhshiRecurrentTargetsAberrant2012; @krysiakRecurrentSomaticMutations2017b]
DTX1 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@gomezUltraDeepSequencingReveals2023; @schmitzGeneticsPathogenesisDiffuse2018a; @loveGeneticLandscapeMutations2012]
EP300 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@pasqualucciInactivatingMutationsAcetyltransferase2011a; @paneaWholeGenomeLandscape2019]
EZH2 1 [@mottokIntegrativeGenomicAnalysis2019b; @morinSomaticMutationsAltering2010a; @loveGeneticLandscapeMutations2012]
FAS 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@schollMutationsRegionFAS2007]
FAT1 1 Spina et al[@spinaGeneticsNodalMarginal2016b]
FOXO1 1 [@morinFrequentMutationHistonemodifying2011; @schmitzBurkittLymphomaPathogenesis2012; @dunsCharacterizationDLBCLPMBL2021b]
H1-4 1
H1-5 1
ID3 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@schmitzBurkittLymphomaPathogenesis2012; @richterRecurrentMutationID32012a]
KLF2 1 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@deschGenotypingCirculatingTumor2020; @pasqualucciAnalysisCodingGenome2011]
KLHL6 1 Ganapathi et al[@ganapathiGeneticLandscapeDural2016] [@morinFrequentMutationHistonemodifying2011; @paneaWholeGenomeLandscape2019]
KMT2D 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@morinFrequentMutationHistonemodifying2011; @beaLandscapeSomaticMutations2013; @grandeGenomewideDiscoverySomatic2019; @deschGenotypingCirculatingTumor2020]
MAP3K14 1 Rossi et al[@rossiAlterationBIRC3Multiple2011a] [@ottoGeneticLesionsTRAF32012a]
MPEG1 1 [@morinMutationalStructuralAnalysis2013]
MYD88 1 Yan et al[@yanBCRTLRSignaling2012a] [@ngoOncogenicallyActiveMYD882011a]
NCOR2 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@schmitzBurkittLymphomaPathogenesis2012; @sarkozyMutationalLandscapeGray2021a]
NOL9 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@schmitzGeneticsPathogenesisDiffuse2018a]
NOTCH1 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@loveGeneticLandscapeMutations2012; @pasqualucciAnalysisCodingGenome2011; @beaLandscapeSomaticMutations2013]
NOTCH2 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@troenNOTCH2MutationsMarginal2008; @paneaWholeGenomeLandscape2019; @beaLandscapeSomaticMutations2013]
PCLO 1 [@lohrDiscoveryPrioritizationSomatic2012a]
POU2AF1 1 [@krysiakRecurrentSomaticMutations2017b]
PTPRD 1 Spina et al[@spinaGeneticsNodalMarginal2016b]
SIN3A 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@grandeGenomewideDiscoverySomatic2019]
SOCS1 1 [@wenigerMutationsTumorSuppressor2006a; @morinFrequentMutationHistonemodifying2011]
SPEN 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@sarkozyMutationalLandscapeGray2021a]
STAT6 1 [@ritzRecurrentMutationsSTAT62009a; @yildizActivatingSTAT6Mutations2015c]
TBL1XR1 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@lohrDiscoveryPrioritizationSomatic2012a]
TNFAIP3 1 Rossi et al[@rossiAlterationBIRC3Multiple2011a] [@compagnoMutationsMultipleGenes2009a; @schmitzTNFAIP3A20Tumor2009a]
TNFRSF14 1 Spina et al[@spinaGeneticsNodalMarginal2016b] [@cheungAcquiredTNFRSF14Mutations2010a; @morinFrequentMutationHistonemodifying2011]
TP53 1 Rossi et al[@rossiCodingGenomeSplenic2012c] [@morinFrequentMutationHistonemodifying2011; @wildaInactivationARFMDM2p53Pathway2004; @beaLandscapeSomaticMutations2013; @tiacciPervasiveMutationsJAKSTAT2018b; @lohrDiscoveryPrioritizationSomatic2012a]
TRAF3 1 Rossi et al[@rossiAlterationBIRC3Multiple2011a] [@pasqualucciAnalysisCodingGenome2011; @ottoGeneticLesionsTRAF32012a]

Tier 2 MZL genes

74 total

Gene Tier First MZL evidence Other entities
ABCA13 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@sarkozyMutationalLandscapeGray2021a]
ACTG1 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@hubschmannMutationalMechanismsShaping2021b; @deschGenotypingCirculatingTumor2020]
ADD2 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
AMN 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
AMOTL1 2 Parry et al[@parryWholeExomeSequencing2013]
AOC2 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
ARHGAP20 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
ARHGEF15 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
ARHGEF17 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
BCOR 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@nadeuGenomicEpigenomicInsights2020b]
C6orf103 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
CBFA2T3 2 Parry et al[@parryWholeExomeSequencing2013]
CD79A 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@burkhardtClinicalRelevanceMolecular2022b]
CD9B 2 Vandenbrand et al[@vandenbrandRecurrentMutationsGenes2017]
CDC42BPB 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@hubschmannMutationalMechanismsShaping2021b]
CDKN2A 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@grandeGenomewideDiscoverySomatic2019; @morinMutationalStructuralAnalysis2013]
CLGN 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
CNBP 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
CNKSR2 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
CREBBP 2 Parry et al[@parryWholeExomeSequencing2013] [@dunsCharacterizationDLBCLPMBL2021b; @pasqualucciInactivatingMutationsAcetyltransferase2011a; @loveGeneticLandscapeMutations2012]
DNAH5 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@morinMutationalStructuralAnalysis2013]
DNAH7 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
DNAI1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
DOCK6 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
DSP 2
DTNB 2
DTX3L 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
EGR1 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@krysiakRecurrentSomaticMutations2017b; @reichelFlowSortingExome2015a]
EGR2 2 Rossi et al[@rossiCodingGenomeSplenic2012c]
EZH1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
FAT4 2 Parry et al[@parryWholeExomeSequencing2013] [@morinMutationalStructuralAnalysis2013; @zhangGenomicLandscapeMantle2014]
FBXO11 2 Parry et al[@parryWholeExomeSequencing2013] [@richterRecurrentMutationID32012a; @hubschmannMutationalMechanismsShaping2021b]
GPR98 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
GPS2 2 Rossi et al[@rossiCodingGenomeSplenic2012c]
HIST1H1D 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]
HIST1H2AD 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
HIST1H2AG 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@paneaWholeGenomeLandscape2019; @morinMutationalStructuralAnalysis2013; @krysiakRecurrentSomaticMutations2017b]
HIST1H2BK 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@paneaWholeGenomeLandscape2019]
HIST4H4 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
HRAS 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@reddyGeneticFunctionalDrivers2017]
IKBKB 2 Rossi et al[@rossiAlterationBIRC3Multiple2011a] [@wienandGenomicAnalysesFlowsorted2019b; @reddyGeneticFunctionalDrivers2017]
KAT6A 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
KDM6A 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
KIF26A 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
LRP1B 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
MCRS1 2 Rossi et al[@rossiCodingGenomeSplenic2012c]
MGA 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@zhangGeneticHeterogeneityDiffuse2013]
MSL2 2 Rossi et al[@rossiCodingGenomeSplenic2012c]
MYC 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@pasqualucciHypermutationMultipleProtooncogenes2001a; @dunsCharacterizationDLBCLPMBL2021b; @johnstonCmycHypermutationBurkitt1992]
MYLK 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
NCOA6 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
NRAS 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
PACRG 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
PARK2 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
PLA2G4D 2 Parry et al[@parryWholeExomeSequencing2013]
PLXNB3 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@zhangGenomicLandscapeMantle2014]
RAF1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
RAPGEF2 2
RCOR1 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
RFTN1 2 [@dunsCharacterizationDLBCLPMBL2021b; @arthurGenomewideDiscoverySomatic2018]
ROCK1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
RPL1L 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
SAMD5 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
SCG3 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
STXBP5 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
SWAP70 2 Rossi et al[@rossiCodingGenomeSplenic2012c]
TAF1 2 Spina et al[@spinaGeneticsNodalMarginal2016b] [@morinMutationalStructuralAnalysis2013]
TBK1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017]
TCTN2 2 Spina et al[@spinaGeneticsNodalMarginal2016b]
TNIP2 2 Vandenbrand et al[@vandenbrandRecurrentMutationsGenes2017]
TRRAP 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@parryWholeExomeSequencing2013]
USH2A 2 Parry et al[@parryWholeExomeSequencing2013]
WAC 2 Rossi et al[@rossiCodingGenomeSplenic2012c] [@reddyGeneticFunctionalDrivers2017]
WNK1 2 Jallades et al[@jalladesExomeSequencingIdentifies2017] [@thomasGeneticSubgroupsInform2023; @hubschmannMutationalMechanismsShaping2021b]

References

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