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Ryan Morin edited this page Dec 16, 2024 · 23 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

[[TOC]]

Overview

S1PR2 is one of a number of genes affected by aberrant somatic hypermutation in B-cell lymphomas, which complicates the interpretation of mutations at this locus.

Relevance tier by entity

Entity Tier Description
PMBL 1 high-confidence PMBL/cHL/GZL gene
BL 2 aSHM target; Although recurrent, the relevance of mutations in BL is tenuous [@muppidiLossSignalingGa132014]
DLBCL 1 aSHM target and high-confidence DLBCL gene [@morinFrequentMutationHistonemodifying2011; @lohrDiscoveryPrioritizationSomatic2012; @morinMutationalStructuralAnalysis2013]
FL 1 aSHM target and high-confidence FL gene

Mutation incidence in large patient cohorts (GAMBL reanalysis)

include:DLBCL_S1PR2.md include:FL_S1PR2.md include:BL_S1PR2.md

Mutation pattern and selective pressure estimates

include:dnds_S1PR2.md

aSHM regions

chr_name hg19_start hg19_end region regulatory_comment
chr19 10340142 10341764 TSS active_promoter

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

S1PR2 Expression

include:mermaid_S1PR2.md

References

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